Information for motif9


Reverse Opposite:

p-value:1e-22
log p-value:-5.147e+01
Information Content per bp:1.737
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif1.86%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets101.5 +/- 44.9bp
Average Position of motif in Background68.5 +/- 0.3bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TGGTGCTAGC
---NGCTN--

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGGTGCTAGC
NATGTTGCAA--

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGGTGCTAGC-
CTGTTGCTAGGS

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGGTGCTAGC--
AGATGCTRCTRCCHT

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TGGTGCTAGC---
---TGCTGACTCA

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------TGGTGCTAGC-------
NTNNNNNGTTGCTANGGNNCANA

MA0510.1_RFX5/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGTGCTAGC---
NCTGTTGCCAGGGAG

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGTGCTAGC---
NCCGTTGCTANGNGN

PB0041.1_Mafb_1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGGTGCTAGC-----
AAATTTGCTGACTTAGA

MA0466.1_CEBPB/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGGTGCTAGC
ATTGTGCAATA