Information for motif12


Reverse Opposite:

p-value:1e-18
log p-value:-4.268e+01
Information Content per bp:1.529
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif2.38%
Number of Background Sequences with motif16.9
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets111.8 +/- 51.2bp
Average Position of motif in Background110.2 +/- 46.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGGCATTGACAC
TGACCTTGAN--

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGGCATTGACAC
TGACCTTGAV--

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGGCATTGACAC
TGACCTTGACCT

MA0505.1_Nr5a2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGCATTGACAC-
GCTGACCTTGAACTN

MA0141.2_Esrrb/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGGCATTGACAC
TGACCTTGANNN

PH0105.1_Meis3/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TGGCATTGACAC------
--GTATTGACAGGTNNTT

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGGCATTGACAC
NCTGTCAATCAN--

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGGCATTGACAC------
--NNATTGACAGGTGCTT

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGGCATTGACAC------
--GGATTGACAGGTCNTT

PH0102.1_Meis1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGGCATTGACAC------
--NTATTGACAGCTNNTT