Information for motif20


Reverse Opposite:

p-value:1e-16
log p-value:-3.693e+01
Information Content per bp:1.841
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets117.7 +/- 57.8bp
Average Position of motif in Background77.3 +/- 42.9bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GCCCTATTTC---
---CTATTTTTGG

PB0200.1_Zfp187_2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCCCTATTTC----
GAGCCCTTGTCCCTAA

PB0128.1_Gcm1_2/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GCCCTATTTC--
NTCNTCCCCTATNNGNN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCCCTATTTC----
--KCTATTTTTRGH

MA0072.1_RORA_2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTATTTC--
TTGACCTANTTATN

MA0083.2_SRF/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTATTTC------
TTNCCTTATTTGGNCATN

MA0095.2_YY1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCCCTATTTC
GCNGCCATCTTG-

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GCCCTATTTC
GGGTGTGCCCAAAAGG

MA0156.1_FEV/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GCCCTATTTC---
-----ATTTCCTG

MA0497.1_MEF2C/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCCCTATTTC------
-TTCTATTTTTAGNNN