Information for motif29


Reverse Opposite:

p-value:1e-12
log p-value:-2.958e+01
Information Content per bp:1.859
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif21.9
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets98.1 +/- 60.9bp
Average Position of motif in Background94.9 +/- 65.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGTCGCTC--
NCTGTCAATCAN

PB0036.1_Irf6_1/Jaspar

Match Rank:2
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------TGTCGCTC--
NNNTTGGTTTCGNTNNN

PB0139.1_Irf5_2/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCGCTC--
NNAATTCTCGNTNAN

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGTCGCTC-
GSCTGTCACTCA

MA0498.1_Meis1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGTCGCTC----
AGCTGTCACTCACCT

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGTCGCTC-
NTATYGATCH

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------TGTCGCTC-
GCGGAGGTGTCGCCTC

PB0035.1_Irf5_1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGTCGCTC---
NTGGTTTCGGTTNNN

PB0032.1_IRC900814_1/Jaspar

Match Rank:9
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------TGTCGCTC--
GNNATTTGTCGTAANN

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGTCGCTC
NNTGTGGTTT