Information for motif3


Reverse Opposite:

p-value:1e-21
log p-value:-4.931e+01
Information Content per bp:1.675
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets92.7 +/- 52.8bp
Average Position of motif in Background195.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0075.1_Prrx2/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AATTCGGCTA
TAATT------

PH0033.1_Gbx1/Jaspar

Match Rank:2
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------AATTCGGCTA
TGCCACTAATTAGTGTA

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AATTCGGCTA
YTAATYNRATTA

PH0089.1_Isx/Jaspar

Match Rank:4
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------AATTCGGCTA
ACTCCTAATTAGTCGT

PB0171.1_Sox18_2/Jaspar

Match Rank:5
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------AATTCGGCTA
NNNNTGAATTCANNNC

Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AATTCGGCTA-
TAATCHGATTAC

PH0021.1_Dlx2/Jaspar

Match Rank:7
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----AATTCGGCTA-
GGAATAATTACCTCAG

PH0107.1_Msx2/Jaspar

Match Rank:8
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------AATTCGGCTA-
ANCGCTAATTGGTCTNN

PH0094.1_Lhx4/Jaspar

Match Rank:9
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------AATTCGGCTA
CAAAGCTAATTAGNTTN

MA0132.1_Pdx1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AATTCGGCTA
CTAATT------