Information for motif40


Reverse Opposite:

p-value:1e-9
log p-value:-2.231e+01
Information Content per bp:1.882
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif4.12%
Number of Background Sequences with motif65.4
Percentage of Background Sequences with motif1.94%
Average Position of motif in Targets91.0 +/- 55.3bp
Average Position of motif in Background109.2 +/- 54.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGCACTCG-
AASCACTCAA

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGCACTCG--
RSCACTYRAG

PB0149.1_Myb_2/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GGCACTCG----
NNNTGGCAGTTGGTNN

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGCACTCG--
AGCCACTCAAG

PB0150.1_Mybl1_2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GGCACTCG----
CACGGCAGTTGGTNN

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------GGCACTCG-
NNNNTTGGGCACNNCN

MA0122.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGCACTCG-
NCCACTTAN

MA0100.2_Myb/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGCACTCG-
TGGCAGTTGN

POL002.1_INR/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGCACTCG-
-TCAGTCTT

PB0147.1_Max_2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGCACTCG----
GTGCCACGCGACTG