Information for motif42


Reverse Opposite:

p-value:1e-9
log p-value:-2.108e+01
Information Content per bp:1.887
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets86.8 +/- 65.1bp
Average Position of motif in Background108.7 +/- 45.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----SGAATGAATA--
ACTATGAATGAATGAT

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---SGAATGAATA-
NNTNTCATGAATGT

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--SGAATGAATA----
NNNTATTGAATTGNNN

PH0063.1_Hoxb8/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----SGAATGAATA--
ACCGGCAATTAATAAA

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--SGAATGAATA-----
NTTNTATGAATGTGNNC

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:SGAATGAATA-
-DGATCRATAN

MF0010.1_Homeobox_class/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:SGAATGAATA
--AATTATT-

MF0005.1_Forkhead_class/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:SGAATGAATA
-AAATAAACA

MA0042.1_FOXI1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:SGAATGAATA---
-AAACAAACANNC

PH0172.1_Tlx2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---SGAATGAATA----
TAATTAATTAATAACTA