Information for motif43


Reverse Opposite:

p-value:1e-8
log p-value:-2.053e+01
Information Content per bp:1.530
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets70.0 +/- 51.7bp
Average Position of motif in Background100.7 +/- 44.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0136.1_IRC900814_2/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---AAAACTCGTA---
ATGGAAAGTCGTAAAA

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAAACTCGTA------
AAACCTCGTAAAATTT

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAAACTCGTA------
AAAGCTCGTAAAATTT

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAAACTCGTA------
TAAAGTCGTAAAACAT

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAAACTCGTA------
TAAAGTCGTAAAATAG

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAAACTCGTA------
TAAAGTCGTAAAACGT

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAAACTCGTA-------
TAAGGTCGTAAAATCCT

PH0077.1_Hoxd12/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAAACTCGTA-------
CAAGGTCGTAAAATCTT

PB0024.1_Gcm1_1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AAAACTCGTA-----
TCGTACCCGCATCATT

PB0146.1_Mafk_2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AAAACTCGTA---
GAAAAAATTGCAAGG