Information for motif5


Reverse Opposite:

p-value:1e-20
log p-value:-4.822e+01
Information Content per bp:1.832
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets95.4 +/- 47.9bp
Average Position of motif in Background83.0 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0027.1_En1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ACAACTACTA
GANCACTACTT

PB0120.1_Foxj1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----ACAACTACTA
ATGTCACAACAACAC

PB0172.1_Sox1_2/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----ACAACTACTA
NNNTAACAATTATAN

MA0009.1_T/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ACAACTACTA
TTCACACCTAG--

MA0032.1_FOXC1/Jaspar

Match Rank:5
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:ACAACTACTA---
-----TACTNNNN

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ACAACTACTA
--AATTATT-

PB0122.1_Foxk1_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ACAACTACTA--
CAAACAACAACACCT

PB0175.1_Sox4_2/Jaspar

Match Rank:8
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------ACAACTACTA-
TNCNNAACAATTTTTNC

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ACAACTACTA--
--AAGCACTTAA

PB0177.1_Sox7_2/Jaspar

Match Rank:10
Score:0.54
Offset:-11
Orientation:reverse strand
Alignment:-----------ACAACTACTA-
NNCNNNCNCANACAATTAGNAC