Information for motif53


Reverse Opposite:

p-value:1e-5
log p-value:-1.366e+01
Information Content per bp:1.530
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif14.6
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets101.8 +/- 56.0bp
Average Position of motif in Background119.1 +/- 44.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0161.1_Six1/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----TGTATCAG----
GATGGGGTATCATTTTT

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGTATCAG
ATTGCATCAK

PB0059.1_Six6_1/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TGTATCAG----
AATAGGGTATCATATAT

PH0166.1_Six6_2/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TGTATCAG----
AATAGGGTATCAATATT

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGTATCAG
ATTGCATCAT

PH0163.1_Six3/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TGTATCAG----
GATAGGGTATCACTAAT

PH0162.1_Six2/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TGTATCAG----
AATGGGGTATCACGTTT

PH0165.1_Six6_1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TGTATCAG----
AATAGGGTATCAATTAT

Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGTATCAG--
TGACTCAGCA

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGTATCAG-
TGGTTTCAGT