Information for motif55


Reverse Opposite:

p-value:1e-3
log p-value:-8.173e+00
Information Content per bp:1.978
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.34%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets97.8 +/- 38.8bp
Average Position of motif in Background100.8 +/- 45.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.71
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0143.1_Klf7_2/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GGACGGAT----
NNNTNGGGCGTATNNTN

Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGACGGAT---
-DCCGGAARYN

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGACGGAT---
ATGATKGATGRC

MA0136.1_ELF5/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGACGGAT---
--AAGGAAGTA

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGACGGAT---
-RCCGGAARYN

PH0025.1_Dmbx1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGACGGAT-------
TGAACCGGATTAATGAA

PH0035.1_Gsc/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGACGGAT--------
NNAAGGGATTAACGANT

PH0129.1_Otx1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGACGGAT--------
AGAGGGGATTAATTTAT

PB0045.1_Myb_1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GGACGGAT-----
NNNNTAACGGTTNNNAN

MA0131.1_HINFP/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GGACGGAT
GCGGACGTTN