Information for motif28


Reverse Opposite:

p-value:1e-21
log p-value:-5.036e+01
Information Content per bp:1.771
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets103.0 +/- 53.3bp
Average Position of motif in Background79.9 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0123.1_Obox3/Jaspar

Match Rank:1
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------GRAKTTAC---
TGAGGGGGATTAACTAT

PH0137.1_Pitx1/Jaspar

Match Rank:2
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GRAKTTAC---
TTAGAGGGATTAACAAT

PH0035.1_Gsc/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GRAKTTAC----
NNAAGGGATTAACGANT

PH0121.1_Obox1/Jaspar

Match Rank:4
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------GRAKTTAC---
TTAAGGGGATTAACTAC

PH0015.1_Crx/Jaspar

Match Rank:5
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GRAKTTAC--
CGTTGGGGATTAGCCT

PH0122.1_Obox2/Jaspar

Match Rank:6
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------GRAKTTAC---
TGAGGGGGATTAACTAT

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GRAKTTAC----
TGAAGGGATTAATCATC

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GRAKTTAC
GGATTAGC

MA0485.1_Hoxc9/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GRAKTTAC----
NTGATTTATGGCC

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GRAKTTAC----
AGGGGGATTAGCTGCC