Information for motif36


Reverse Opposite:

p-value:1e-19
log p-value:-4.434e+01
Information Content per bp:1.530
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets103.5 +/- 55.7bp
Average Position of motif in Background101.4 +/- 42.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTGGCCCGTG
TTGGCA----

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTGGCCCGTG-
-NGKCACGTGM

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TTGGCCCGTG
--GNCACGTG

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TTGGCCCGTG
--GHCACGTG

MA0464.1_Bhlhe40/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TTGGCCCGTG--
-NTGCACGTGAG

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTGGCCCGTG---
NNANTTGACCCCTNNNN

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTGGCCCGTG
CCGATTGGCT----

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TTGGCCCGTG
--NCCACGTG

MA0004.1_Arnt/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TTGGCCCGTG
----CACGTG

PB0147.1_Max_2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTGGCCCGTG----
NNGTCGCGTGNCAC