Information for motif39


Reverse Opposite:

p-value:1e-17
log p-value:-3.982e+01
Information Content per bp:1.743
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets103.9 +/- 57.5bp
Average Position of motif in Background140.5 +/- 40.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GCCACVCCCA
GCCACACCCA

MA0493.1_Klf1/Jaspar

Match Rank:2
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-GCCACVCCCA
GGCCACACCCA

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:3
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GCCACVCCCA
GCCMCRCCCH

MA0039.2_Klf4/Jaspar

Match Rank:4
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GCCACVCCCA
GCCCCACCCA

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:5
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-GCCACVCCCA-
GGCCACACCCAN

MA0599.1_KLF5/Jaspar

Match Rank:6
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GCCACVCCCA
GCCCCGCCCC

PB0039.1_Klf7_1/Jaspar

Match Rank:7
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GCCACVCCCA---
TCGACCCCGCCCCTAT

PB0180.1_Sp4_2/Jaspar

Match Rank:8
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GCCACVCCCA--
NNGGCCACGCCTTTN

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GCCACVCCCA--
NAGCCCCGCCCCCN

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCCACVCCCA
-CCCCCCCC-