Information for motif40


Reverse Opposite:

p-value:1e-17
log p-value:-3.982e+01
Information Content per bp:1.879
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets111.3 +/- 44.9bp
Average Position of motif in Background123.7 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CCRAAAATCA
GGCCATAAATCA

MA0485.1_Hoxc9/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CCRAAAATCA-
GGCCATAAATCAC

MA0594.1_Hoxa9/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CCRAAAATCA
GCCATAAATCA

MA0038.1_Gfi1/Jaspar

Match Rank:4
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CCRAAAATCA---
---CAAATCACTG

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCRAAAATCA
GGCCATAAATCA

PH0037.1_Hdx/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCRAAAATCA-----
AAGGCGAAATCATCGCA

MA0497.1_MEF2C/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCRAAAATCA--
ATGCTAAAAATAGAA

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCRAAAATCA-
DCYAAAAATAGM

PB0186.1_Tcf3_2/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCRAAAATCA---
AGCCGAAAAAAAAAT

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCRAAAATCA
CCAAAAATAG