Information for motif41


Reverse Opposite:

p-value:1e-16
log p-value:-3.764e+01
Information Content per bp:1.850
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets92.1 +/- 53.5bp
Average Position of motif in Background63.6 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0025.1_Dmbx1/Jaspar

Match Rank:1
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----CAATCCKA----
NNNATTAATCCGNTTNA

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CAATCCKA
GCTAATCC--

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CAATCCKA----
CNATAATCCGNTTNT

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CAATCCKA
TAATCCCN

PH0035.1_Gsc/Jaspar

Match Rank:5
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------CAATCCKA---
AATCGTTAATCCCTTTA

PB0185.1_Tcf1_2/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CAATCCKA----
NNTAATCCNGNCNN

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CAATCCKA---
GNNNATTAATCCCTNCN

PB0106.1_Arid5a_2/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CAATCCKA-----
CATACAATACGAAATAA

Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAATCCKA----
TAATCHGATTAC

MA0038.1_Gfi1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAATCCKA-
CAAATCACTG