Information for motif42


Reverse Opposite:

p-value:1e-15
log p-value:-3.585e+01
Information Content per bp:1.926
Number of Target Sequences with motif119.0
Percentage of Target Sequences with motif3.52%
Number of Background Sequences with motif31.4
Percentage of Background Sequences with motif1.54%
Average Position of motif in Targets105.6 +/- 58.2bp
Average Position of motif in Background115.1 +/- 58.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0153.1_Prop1/Jaspar

Match Rank:1
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------AATTAAGA---
CGAATTAATTAAGAAAC

PH0133.1_Pax7/Jaspar

Match Rank:2
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------AATTAAGA---
CGAACTAATTAGTACTA

MA0075.1_Prrx2/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AATTAAGA
AATTA---

PH0175.1_Vax2/Jaspar

Match Rank:4
Score:0.73
Offset:-7
Orientation:forward strand
Alignment:-------AATTAAGA-
GTGCACTAATTAAGAC

PH0063.1_Hoxb8/Jaspar

Match Rank:5
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------AATTAAGA--
ACCGGCAATTAATAAA

PH0127.1_Nobox/Jaspar

Match Rank:6
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------AATTAAGA---
CGCGCTAATTAGGTATC

PB0176.1_Sox5_2/Jaspar

Match Rank:7
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----AATTAAGA--
NNCTNAATTATGANN

MA0063.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AATTAAGA
CAATTAA--

PH0136.1_Phox2b/Jaspar

Match Rank:9
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------AATTAAGA--
CGGAATTAATTAATAGG

PH0069.1_Hoxc4/Jaspar

Match Rank:10
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------AATTAAGA---
CGAATTAATTAACAATA