Information for motif47


Reverse Opposite:

p-value:1e-12
log p-value:-2.787e+01
Information Content per bp:1.530
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets108.9 +/- 51.8bp
Average Position of motif in Background164.0 +/- 13.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0032.1_IRC900814_1/Jaspar

Match Rank:1
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------GACAAATT--
ATTTACGACAAATAGC

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:2
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----GACAAATT--
ACCGTGACTAATTNN

PH0107.1_Msx2/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GACAAATT------
GAAGACCAATTAGCGCT

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GACAAATT-
NNCNNAACAATTNT

PH0089.1_Isx/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GACAAATT------
ACNNCTAATTAGNNNN

PH0033.1_Gbx1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GACAAATT------
TGCCACTAATTAGTGTA

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GACAAATT----
TNCNNAACAATTTTTNC

PH0132.1_Pax6/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GACAAATT-------
TGATTAATTAATTGAC

MA0075.1_Prrx2/Jaspar

Match Rank:9
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GACAAATT-
----AATTA

PH0029.1_En2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GACAAATT------
NTNCACTAATTAGNGCA