Information for motif48


Reverse Opposite:

p-value:1e-11
log p-value:-2.729e+01
Information Content per bp:1.530
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets99.2 +/- 51.8bp
Average Position of motif in Background88.7 +/- 17.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0464.1_Bhlhe40/Jaspar

Match Rank:1
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:CGCTGCACGTGA-
--NTGCACGTGAG

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.74
Offset:4
Orientation:forward strand
Alignment:CGCTGCACGTGA--
----KCACGTGMCN

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:3
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:CGCTGCACGTGA-
-----CACGTGDC

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:CGCTGCACGTGA-
-----CACGTGNC

MA0004.1_Arnt/Jaspar

Match Rank:5
Score:0.70
Offset:5
Orientation:forward strand
Alignment:CGCTGCACGTGA
-----CACGTG-

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CGCTGCACGTGA--
----TCACGTGACC

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CGCTGCACGTGA-
---KCCACGTGAC

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:8
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CGCTGCACGTGA-
---ACCACGTGAC

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGCTGCACGTGA-------
GGAAGAGTCACGTGACCAATAC

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer

Match Rank:10
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CGCTGCACGTGA
---NCCACGTG-