Information for motif52


Reverse Opposite:

p-value:1e-6
log p-value:-1.438e+01
Information Content per bp:1.972
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets119.2 +/- 51.8bp
Average Position of motif in Background86.0 +/- 41.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0151.1_ARID3A/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:forward strand
Alignment:CATATTAA-
---ATTAAA

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------CATATTAA
NNTNNCAATATTAG

PH0150.1_Pou4f3/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CATATTAA-------
AGTTATTAATGAGGTC

PB0129.1_Glis2_2/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CATATTAA------
AATATTAATAAAGA

MA0063.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CATATTAA
-CAATTAA

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CATATTAA-
NGCAATTAAA

PB0187.1_Tcf7_2/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CATATTAA------
CCGTATTATAAACAA

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CATATTAA--------
GAAAATTAATTACTTCG

PH0120.1_Nkx6-3/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CATATTAA--------
GAAAATTAATTACTTTG

PH0172.1_Tlx2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CATATTAA-------
AANTTATTAATTAATTA