Information for motif8


Reverse Opposite:

p-value:1e-31
log p-value:-7.320e+01
Information Content per bp:1.727
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets95.3 +/- 46.2bp
Average Position of motif in Background119.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0072.1_RORA_2/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTKGATCTAKTT---
-TTGACCTANTTATN

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTKGATCTAKTT------
-GAAAACTAGTTAACATC

MA0497.1_MEF2C/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CTKGATCTAKTT-------
----TTCTATTTTTAGNNN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CTKGATCTAKTT-----
-----KCTATTTTTRGH

MA0132.1_Pdx1/Jaspar

Match Rank:5
Score:0.61
Offset:6
Orientation:forward strand
Alignment:CTKGATCTAKTT
------CTAATT

MA0071.1_RORA_1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTKGATCTAKTT
--TGACCTTGAT

MA0052.2_MEF2A/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTKGATCTAKTT------
---NNGCTATTTTTAGCN

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:8
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CTKGATCTAKTT----
------CTATTTTTGG

PH0045.1_Hoxa1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTKGATCTAKTT-----
-CTGAGCTAATTACCGT

PH0079.1_Hoxd3/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTKGATCTAKTT-----
-TTGAGTTAATTAACCT