Information for motif9


Reverse Opposite:

p-value:1e-30
log p-value:-7.118e+01
Information Content per bp:1.698
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets103.1 +/- 50.3bp
Average Position of motif in Background43.9 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TTTCAAAACATT
CGGTTTCAAA-----

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTTCAAAACATT---
AACACCAAAACAAAGGA

PB0141.1_Isgf3g_2/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TTTCAAAACATT----
--GCAAAACATTACTA

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTTCAAAACATT--
NTTNAGAACAATTA

PB0067.1_Sox18_1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTTCAAAACATT----
NNTNANAACAATTNNA

PB0123.1_Foxl1_2/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTTCAAAACATT---
ATATCAAAACAAAACA

MA0157.1_FOXO3/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TTTCAAAACATT
--TGTAAACA--

MA0102.3_CEBPA/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTTCAAAACATT
ATTGCACAATA--

PB0145.1_Mafb_2/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TTTCAAAACATT
CAATTGCAAAAATAT

MA0040.1_Foxq1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TTTCAAAACATT-
--AATAAACAATN