Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3377)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 2040)	% of Background Sequences with Motif
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-8	-1.998e+01	0.0000	154.0	4.56%	56.5	2.77%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-7	-1.808e+01	0.0000	744.0	22.02%	372.1	18.22%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-7	-1.786e+01	0.0000	267.0	7.90%	114.4	5.60%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-7	-1.629e+01	0.0000	17.0	0.50%	2.7	0.13%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-4	-1.040e+01	0.0015	392.0	11.60%	194.4	9.52%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-4	-1.019e+01	0.0015	174.0	5.15%	77.0	3.77%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-4	-9.831e+00	0.0019	552.0	16.34%	285.9	14.00%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-4	-9.751e+00	0.0019	110.0	3.26%	45.5	2.23%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-3	-9.127e+00	0.0030	140.0	4.14%	61.3	3.00%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-3	-8.922e+00	0.0033	104.0	3.08%	43.8	2.15%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-3	-8.910e+00	0.0033	271.0	8.02%	131.7	6.45%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-3	-8.876e+00	0.0033	189.0	5.59%	87.4	4.28%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-3	-8.321e+00	0.0046	579.0	17.14%	305.4	14.96%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-3	-8.243e+00	0.0046	261.0	7.72%	127.6	6.25%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-3	-8.070e+00	0.0051	1501.0	44.42%	847.9	41.53%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-3	-7.761e+00	0.0065	39.0	1.15%	13.2	0.65%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-7.656e+00	0.0068	331.0	9.80%	167.7	8.21%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-3	-7.298e+00	0.0093	237.0	7.01%	116.9	5.72%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-3	-6.971e+00	0.0122	31.0	0.92%	10.4	0.51%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-6.832e+00	0.0133	327.0	9.68%	167.2	8.19%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-6.585e+00	0.0162	16.0	0.47%	4.7	0.23%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-6.451e+00	0.0176	74.0	2.19%	31.0	1.52%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-2	-6.439e+00	0.0176	783.0	23.17%	430.9	21.10%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-2	-6.271e+00	0.0194	13.0	0.38%	3.4	0.17%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-6.228e+00	0.0194	45.0	1.33%	18.0	0.88%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-6.086e+00	0.0215	53.0	1.57%	21.6	1.06%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-6.074e+00	0.0215	471.0	13.94%	251.1	12.30%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-5.742e+00	0.0282	1536.0	45.46%	880.9	43.14%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-5.642e+00	0.0301	68.0	2.01%	30.0	1.47%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-5.620e+00	0.0301	54.0	1.60%	22.8	1.12%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-5.616e+00	0.0301	114.0	3.37%	54.0	2.64%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-5.461e+00	0.0327	85.0	2.52%	38.5	1.89%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-2	-5.418e+00	0.0331	156.0	4.62%	77.0	3.77%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-5.404e+00	0.0331	35.0	1.04%	13.4	0.66%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-5.283e+00	0.0357	424.0	12.55%	227.1	11.12%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-5.199e+00	0.0377	378.0	11.19%	201.0	9.85%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-5.108e+00	0.0402	442.0	13.08%	238.2	11.67%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-5.051e+00	0.0415	225.0	6.66%	115.9	5.68%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-4.967e+00	0.0439	352.0	10.42%	187.7	9.19%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-4.741e+00	0.0537	282.0	8.35%	149.0	7.30%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-4.687e+00	0.0553	23.0	0.68%	8.4	0.41%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-4.632e+00	0.0570	269.0	7.96%	141.6	6.94%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-4.451e+00	0.0667	29.0	0.86%	11.8	0.58%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-4.398e+00	0.0688	202.0	5.98%	104.7	5.13%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-4.261e+00	0.0771	187.0	5.53%	96.6	4.73%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-4.105e+00	0.0882	114.0	3.37%	56.7	2.78%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-4.081e+00	0.0884	234.0	6.93%	123.1	6.03%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-4.028e+00	0.0913	351.0	10.39%	190.7	9.34%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-3.909e+00	0.1008	8.0	0.24%	2.9	0.14%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.906e+00	0.1008	93.0	2.75%	45.9	2.25%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-3.791e+00	0.1089	434.0	12.84%	239.3	11.72%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.539e+00	0.1374	311.0	9.20%	169.4	8.30%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-3.482e+00	0.1428	35.0	1.04%	15.4	0.75%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-3.471e+00	0.1428	218.0	6.45%	116.9	5.73%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-1	-3.470e+00	0.1428	25.0	0.74%	10.7	0.52%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-3.234e+00	0.1730	213.0	6.30%	114.9	5.63%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-1	-3.177e+00	0.1799	151.0	4.47%	80.0	3.92%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-3.161e+00	0.1799	126.0	3.73%	66.0	3.23%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.107e+00	0.1866	115.0	3.40%	59.9	2.94%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.074e+00	0.1895	16.0	0.47%	6.5	0.32%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1	-3.041e+00	0.1927	30.0	0.89%	13.0	0.64%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-1	-3.032e+00	0.1927	18.0	0.53%	7.4	0.36%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.011e+00	0.1927	262.0	7.75%	143.1	7.01%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.983e+00	0.1946	82.0	2.43%	41.7	2.04%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-1	-2.964e+00	0.1953	7.0	0.21%	2.9	0.14%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.832e+00	0.2195	252.0	7.46%	138.1	6.76%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.825e+00	0.2195	39.0	1.15%	18.6	0.91%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.820e+00	0.2195	126.0	3.73%	66.3	3.25%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.717e+00	0.2356	70.0	2.07%	35.4	1.73%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.631e+00	0.2530	195.0	5.77%	106.3	5.20%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-2.608e+00	0.2553	11.0	0.33%	4.8	0.23%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-2.591e+00	0.2560	413.0	12.22%	233.0	11.41%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.553e+00	0.2624	13.0	0.38%	5.9	0.29%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-2.541e+00	0.2624	89.0	2.63%	46.6	2.28%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.526e+00	0.2624	71.0	2.10%	36.9	1.81%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.516e+00	0.2624	96.0	2.84%	50.3	2.47%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-2.512e+00	0.2624	786.0	23.26%	454.7	22.27%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-2.446e+00	0.2731	4.0	0.12%	1.6	0.08%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.398e+00	0.2831	56.0	1.66%	28.7	1.40%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-2.366e+00	0.2887	363.0	10.74%	205.8	10.08%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.359e+00	0.2887	752.0	22.26%	435.1	21.31%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-2.337e+00	0.2899	125.0	3.70%	67.2	3.29%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.229e+00	0.3191	147.0	4.35%	80.5	3.94%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.223e+00	0.3191	192.0	5.68%	106.6	5.22%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.169e+00	0.3309	157.0	4.65%	86.2	4.22%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-2.129e+00	0.3402	690.0	20.42%	400.5	19.62%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.068e+00	0.3573	232.0	6.87%	130.3	6.38%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.064e+00	0.3573	42.0	1.24%	21.7	1.06%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.036e+00	0.3609	218.0	6.45%	122.1	5.98%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.990e+00	0.3738	274.0	8.11%	155.5	7.62%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.982e+00	0.3738	147.0	4.35%	81.5	3.99%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.955e+00	0.3786	27.0	0.80%	14.0	0.68%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.907e+00	0.3927	174.0	5.15%	97.7	4.78%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.861e+00	0.4070	43.0	1.27%	22.8	1.11%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.850e+00	0.4072	230.0	6.81%	130.2	6.38%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.844e+00	0.4072	66.0	1.95%	35.9	1.76%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.805e+00	0.4172	21.0	0.62%	10.2	0.50%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.754e+00	0.4344	19.0	0.56%	9.7	0.47%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.559e+00	0.5228	87.0	2.57%	48.8	2.39%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.521e+00	0.5374	1244.0	36.82%	739.0	36.19%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.504e+00	0.5416	78.0	2.31%	44.0	2.15%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.452e+00	0.5644	798.0	23.62%	471.4	23.09%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.433e+00	0.5701	27.0	0.80%	14.0	0.69%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.423e+00	0.5701	55.0	1.63%	30.3	1.48%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.377e+00	0.5912	242.0	7.16%	140.3	6.87%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.357e+00	0.5975	262.0	7.75%	152.3	7.46%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.329e+00	0.6085	233.0	6.90%	135.1	6.62%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.314e+00	0.6121	23.0	0.68%	12.3	0.60%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.304e+00	0.6127	30.0	0.89%	16.7	0.82%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.284e+00	0.6195	170.0	5.03%	98.3	4.82%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.274e+00	0.6201	85.0	2.52%	48.6	2.38%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.258e+00	0.6242	574.0	16.99%	339.1	16.61%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.244e+00	0.6275	95.0	2.81%	54.0	2.65%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.231e+00	0.6298	47.0	1.39%	26.6	1.30%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.207e+00	0.6398	213.0	6.30%	124.9	6.12%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.196e+00	0.6415	81.0	2.40%	46.7	2.29%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.185e+00	0.6426	243.0	7.19%	142.1	6.96%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.185e+00	0.6426	206.0	6.10%	120.5	5.90%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.148e+00	0.6560	1018.0	30.13%	607.5	29.76%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.073e+00	0.7008	392.0	11.60%	232.6	11.39%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.069e+00	0.7008	80.0	2.37%	46.1	2.26%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.056e+00	0.7011	34.0	1.01%	19.4	0.95%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.053e+00	0.7011	154.0	4.56%	90.5	4.43%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.047e+00	0.7011	298.0	8.82%	176.8	8.66%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.030e+00	0.7028	1453.0	43.00%	871.4	42.68%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.013e+00	0.7089	125.0	3.70%	73.7	3.61%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-9.803e-01	0.7268	190.0	5.62%	112.0	5.49%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-9.724e-01	0.7268	6.0	0.18%	3.8	0.19%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-9.631e-01	0.7279	163.0	4.82%	96.7	4.74%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-9.550e-01	0.7282	553.0	16.37%	330.7	16.20%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.477e-01	0.7282	30.0	0.89%	17.2	0.84%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.477e-01	0.7282	30.0	0.89%	17.2	0.84%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-9.430e-01	0.7282	298.0	8.82%	177.7	8.70%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-9.232e-01	0.7292	119.0	3.52%	70.9	3.47%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-9.175e-01	0.7292	134.0	3.97%	79.6	3.90%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-8.995e-01	0.7358	776.0	22.97%	465.9	22.82%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.800e-01	0.7448	33.0	0.98%	19.6	0.96%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-8.598e-01	0.7545	215.0	6.36%	128.7	6.31%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-8.579e-01	0.7545	388.0	11.48%	232.9	11.41%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.429e-01	0.7564	499.0	14.77%	299.1	14.65%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.097e-01	0.7764	61.0	1.81%	36.8	1.80%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-7.987e-01	0.7795	229.0	6.78%	137.7	6.75%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-7.424e-01	0.8188	82.0	2.43%	49.2	2.41%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.154e-01	0.8353	90.0	2.66%	54.6	2.68%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-6.792e-01	0.8602	35.0	1.04%	21.2	1.04%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.133e-01	0.9125	158.0	4.68%	96.8	4.74%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.000e-01	0.9184	138.0	4.08%	84.9	4.16%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-5.995e-01	0.9184	331.0	9.80%	201.3	9.86%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-5.943e-01	0.9184	944.0	27.94%	572.4	28.03%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.332e-01	0.9623	275.0	8.14%	168.0	8.23%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.282e-01	0.9623	86.0	2.55%	53.6	2.63%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-5.245e-01	0.9623	209.0	6.19%	128.1	6.27%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.156e-01	0.9623	94.0	2.78%	58.1	2.85%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-5.136e-01	0.9623	342.0	10.12%	209.0	10.24%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.690e-01	0.9929	175.0	5.18%	108.2	5.30%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.649e-01	0.9929	170.0	5.03%	105.2	5.15%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-4.417e-01	1.0000	3.0	0.09%	2.6	0.13%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.228e-01	1.0000	553.0	16.37%	339.1	16.61%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.173e-01	1.0000	52.0	1.54%	33.6	1.64%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.173e-01	1.0000	52.0	1.54%	33.4	1.64%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-3.815e-01	1.0000	15.0	0.44%	10.9	0.53%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.726e-01	1.0000	45.0	1.33%	29.9	1.46%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.603e-01	1.0000	705.0	20.86%	433.1	21.21%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.497e-01	1.0000	130.0	3.85%	82.6	4.05%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-3.434e-01	1.0000	75.0	2.22%	48.9	2.39%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.422e-01	1.0000	43.0	1.27%	28.9	1.41%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.326e-01	1.0000	271.0	8.02%	169.1	8.28%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.204e-01	1.0000	57.0	1.69%	37.8	1.85%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.196e-01	1.0000	547.0	16.19%	338.5	16.58%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-3.191e-01	1.0000	393.0	11.63%	244.9	12.00%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.157e-01	1.0000	352.0	10.42%	219.4	10.75%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-3.110e-01	1.0000	76.0	2.25%	49.8	2.44%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.107e-01	1.0000	121.0	3.58%	77.4	3.79%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.560e-01	1.0000	8.0	0.24%	6.4	0.32%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.454e-01	1.0000	26.0	0.77%	18.7	0.91%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.358e-01	1.0000	5.0	0.15%	4.6	0.22%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.238e-01	1.0000	283.0	8.38%	179.2	8.78%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.222e-01	1.0000	149.0	4.41%	96.5	4.73%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.189e-01	1.0000	231.0	6.84%	147.2	7.21%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.118e-01	1.0000	1.0	0.03%	0.8	0.04%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-2.118e-01	1.0000	1.0	0.03%	1.4	0.07%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.014e-01	1.0000	1006.0	29.77%	622.1	30.47%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.973e-01	1.0000	75.0	2.22%	50.8	2.49%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.850e-01	1.0000	45.0	1.33%	31.2	1.53%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.817e-01	1.0000	84.0	2.49%	56.9	2.79%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.817e-01	1.0000	84.0	2.49%	56.2	2.75%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.709e-01	1.0000	2.0	0.06%	3.0	0.15%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.683e-01	1.0000	40.0	1.18%	28.2	1.38%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.630e-01	1.0000	445.0	13.17%	281.9	13.81%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.556e-01	1.0000	52.0	1.54%	36.8	1.80%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.543e-01	1.0000	199.0	5.89%	129.6	6.35%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.234e-01	1.0000	210.0	6.21%	137.3	6.73%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.167e-01	1.0000	472.0	13.97%	300.0	14.69%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.150e-01	1.0000	8.0	0.24%	7.5	0.37%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.092e-01	1.0000	4.0	0.12%	4.8	0.23%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.090e-01	1.0000	468.0	13.85%	298.5	14.62%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.057e-01	1.0000	22.0	0.65%	17.1	0.84%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.057e-01	1.0000	22.0	0.65%	17.8	0.87%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.029e-01	1.0000	61.0	1.81%	43.8	2.15%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-9.606e-02	1.0000	44.0	1.30%	32.6	1.60%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-8.475e-02	1.0000	20.0	0.59%	16.2	0.79%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-8.002e-02	1.0000	63.0	1.86%	45.5	2.23%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-7.156e-02	1.0000	40.0	1.18%	30.9	1.52%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.107e-02	1.0000	61.0	1.81%	44.7	2.19%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.085e-02	1.0000	21.0	0.62%	17.6	0.86%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-6.954e-02	1.0000	423.0	12.52%	273.0	13.37%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-6.574e-02	1.0000	28.0	0.83%	22.7	1.11%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-6.486e-02	1.0000	180.0	5.33%	121.5	5.95%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.165e-02	1.0000	546.0	16.16%	350.0	17.14%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.902e-02	1.0000	16.0	0.47%	14.0	0.69%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-4.357e-02	1.0000	326.0	9.65%	215.5	10.55%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-4.179e-02	1.0000	605.0	17.90%	389.5	19.08%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.128e-02	1.0000	53.0	1.57%	40.8	2.00%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.068e-02	1.0000	17.0	0.50%	15.1	0.74%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.652e-02	1.0000	178.0	5.27%	122.1	5.98%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.438e-02	1.0000	102.0	3.02%	73.8	3.61%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-3.176e-02	1.0000	39.0	1.15%	31.8	1.56%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.882e-02	1.0000	33.0	0.98%	27.7	1.35%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.312e-02	1.0000	490.0	14.50%	321.9	15.77%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.280e-02	1.0000	12.0	0.36%	12.2	0.60%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.185e-02	1.0000	689.0	20.39%	445.0	21.80%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.179e-02	1.0000	76.0	2.25%	57.2	2.80%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.073e-02	1.0000	45.0	1.33%	36.2	1.78%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.630e-02	1.0000	123.0	3.64%	89.5	4.38%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.469e-02	1.0000	296.0	8.76%	201.9	9.89%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.383e-02	1.0000	185.0	5.47%	130.0	6.37%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.345e-02	1.0000	171.0	5.06%	121.8	5.97%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.164e-02	1.0000	99.0	2.93%	74.7	3.66%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.007e-02	1.0000	5.0	0.15%	7.6	0.37%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-9.077e-03	1.0000	329.0	9.74%	225.0	11.02%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-7.726e-03	1.0000	147.0	4.35%	107.3	5.26%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.713e-03	1.0000	60.0	1.78%	49.7	2.44%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-5.301e-03	1.0000	488.0	14.44%	327.7	16.05%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-5.126e-03	1.0000	483.0	14.29%	324.4	15.89%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-5.107e-03	1.0000	54.0	1.60%	45.8	2.24%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.990e-03	1.0000	879.0	26.01%	571.9	28.01%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.361e-03	1.0000	142.0	4.20%	106.4	5.21%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.222e-03	1.0000	9.0	0.27%	12.8	0.63%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.956e-03	1.0000	581.0	17.19%	390.3	19.11%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.750e-04	1.0000	35.0	1.04%	34.8	1.71%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-5.810e-04	1.0000	260.0	7.69%	189.4	9.28%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.770e-04	1.0000	252.0	7.46%	185.1	9.06%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.120e-04	1.0000	29.0	0.86%	32.2	1.58%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-8.400e-05	1.0000	61.0	1.81%	57.9	2.83%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	5.3	0.26%