Information for motif21


Reverse Opposite:

p-value:1e-20
log p-value:-4.815e+01
Information Content per bp:1.625
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif28.70%
Number of Background Sequences with motif11.5
Percentage of Background Sequences with motif7.42%
Average Position of motif in Targets93.9 +/- 50.9bp
Average Position of motif in Background82.8 +/- 46.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----AGTAACAG
SCCTAGCAACAG

BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGTAACAG---
-NHAACBGYYV

MA0498.1_Meis1/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----AGTAACAG--
NNNTGAGTGACAGCT

MA0510.1_RFX5/Jaspar

Match Rank:4
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------AGTAACAG-
CTCCCTGGCAACAGC

MA0111.1_Spz1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGTAACAG-
AGGGTAACAGC

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGTAACAG
CCAGGAACAG

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGTAACAG--
TGAGTGACAGSC

PB0119.1_Foxa2_2/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGTAACAG----
AAAAATAACAAACGG

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------AGTAACAG-
CCGCATAGCAACGGA

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGTAACAG------
NNATTGACAGGTGCTT