Information for motif4


Reverse Opposite:

p-value:1e-26
log p-value:-6.095e+01
Information Content per bp:1.668
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif8.16%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets120.1 +/- 56.5bp
Average Position of motif in Background17.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.68
Offset:5
Orientation:forward strand
Alignment:GVAAAAAGCCAG
-----CAGCC--

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GVAAAAAGCCAG
---NGAAGC---

MA0161.1_NFIC/Jaspar

Match Rank:3
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:GVAAAAAGCCAG
------TGCCAA

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:4
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GVAAAAAGCCAG---
-----ATGCCAGACN

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GVAAAAAGCCAG
TGGCAGNCTGCCAG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GVAAAAAGCCAG
----BCAGACWA

MA0164.1_Nr2e3/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GVAAAAAGCCAG
-----AAGCTTG

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GVAAAAAGCCAG-
TTGGCANNNTGCCAAG

MA0119.1_TLX1::NFIC/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GVAAAAAGCCAG
TGGCACCATGCCAA

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GVAAAAAGCCAG
---CACAGN---