Information for motif38


Reverse Opposite:

p-value:1e-8
log p-value:-1.875e+01
Information Content per bp:1.597
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif19.42%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif5.24%
Average Position of motif in Targets114.1 +/- 52.6bp
Average Position of motif in Background94.2 +/- 73.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0145.1_Pou2f3/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCTATGCTAR-----
TTGTATGCAAATTAGA

PH0144.1_Pou2f2/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TCTATGCTAR-----
TTGTATGCAAATTAGA

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCTATGCTAR-
-CTATTTTTGG

MA0497.1_MEF2C/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCTATGCTAR----
TTCTATTTTTAGNNN

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TCTATGCTAR-
CCATTGTATGCAAAT

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TCTATGCTAR-
-TTATGCAAAT

MA0033.1_FOXL1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TCTATGCTAR
--TATGTNTA

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCTATGCTAR--
KCTATTTTTRGH

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TCTATGCTAR-
NNNNTTGTGTGCTTNN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCTATGCTAR-
-CTGTTCCTGG