p-value: | 1e-18 |
log p-value: | -4.210e+01 |
Information Content per bp: | 1.735 |
Number of Target Sequences with motif | 31.0 |
Percentage of Target Sequences with motif | 9.37% |
Number of Background Sequences with motif | 3.8 |
Percentage of Background Sequences with motif | 1.42% |
Average Position of motif in Targets | 99.8 +/- 64.4bp |
Average Position of motif in Background | 64.9 +/- 66.5bp |
Strand Bias (log2 ratio + to - strand density) | -0.1 |
Multiplicity (# of sites on avg that occur together) | 1.14 |
Motif File: | file (matrix) reverse opposite |
PDF Format Logos: | forward logo reverse opposite |
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer
Match Rank: | 1 |
Score: | 0.64 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --TTYTTATAGAAA- CATTGTTATGCAAAT |
|

|
|
PB0080.1_Tbp_1/Jaspar
Match Rank: | 2 |
Score: | 0.64 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --TTYTTATAGAAA-- TCTTTATATATAAATA |
|

|
|
MA0108.2_TBP/Jaspar
Match Rank: | 3 |
Score: | 0.61 |
Offset: | -6 |
Orientation: | reverse strand |
Alignment: | ------TTYTTATAGAAA NNNNNNCTTTTATAN--- |
|

|
|
MA0142.1_Pou5f1::Sox2/Jaspar
Match Rank: | 4 |
Score: | 0.61 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --TTYTTATAGAAA- CTTTGTTATGCAAAT |
|

|
|
POL012.1_TATA-Box/Jaspar
Match Rank: | 5 |
Score: | 0.61 |
Offset: | -6 |
Orientation: | reverse strand |
Alignment: | ------TTYTTATAGAAA NNNNNNCTTTTATAN--- |
|

|
|
PB0116.1_Elf3_2/Jaspar
Match Rank: | 6 |
Score: | 0.60 |
Offset: | -5 |
Orientation: | reverse strand |
Alignment: | -----TTYTTATAGAAA GNATTTTTTTTTTGANC |
|

|
|
PB0187.1_Tcf7_2/Jaspar
Match Rank: | 7 |
Score: | 0.60 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | TTYTTATAGAAA--- CCGTATTATAAACAA |
|

|
|
PH0078.1_Hoxd13/Jaspar
Match Rank: | 8 |
Score: | 0.59 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -TTYTTATAGAAA--- CTACCAATAAAATTCT |
|

|
|
MA0052.2_MEF2A/Jaspar
Match Rank: | 9 |
Score: | 0.59 |
Offset: | -4 |
Orientation: | reverse strand |
Alignment: | ----TTYTTATAGAAA NNGCTATTTTTAGCN- |
|

|
|
PB0192.1_Tcfap2e_2/Jaspar
Match Rank: | 10 |
Score: | 0.58 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | TTYTTATAGAAA-- TACTGGAAAAAAAA |
|

|
|