Information for motif5


Reverse Opposite:

p-value:1e-27
log p-value:-6.396e+01
Information Content per bp:1.679
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif1.66%
Average Position of motif in Targets95.3 +/- 55.0bp
Average Position of motif in Background62.1 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0024.1_Gcm1_1/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCCCTCATAT--
TCGTACCCGCATCATT

MA0597.1_THAP1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCCCTCATAT
CTGCCCGCA---

MA0488.1_JUN/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTCATAT-
ATGACATCATCNN

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCCTCATAT
AASCACTCAA--

TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTCATAT----
TGWCCTCARNTGACC

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCCTCATAT
AGCCACTCAAG-

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCCCTCATAT--
GCCGCCATCTTG

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCCCTCATAT--
TNCCATATATGG

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCCCTCATAT-
-NCCTTATCTG

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCCCTCATAT
---GTCATN-