Information for motif12


Reverse Opposite:

p-value:1e-17
log p-value:-3.980e+01
Information Content per bp:1.686
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif25.24%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif3.69%
Average Position of motif in Targets118.5 +/- 50.0bp
Average Position of motif in Background72.9 +/- 48.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AAAGCACACWAA---
CGAAGCACACAAAATA

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAAGCACACWAA
AAACCACANN--

MA0511.1_RUNX2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AAAGCACACWAA--
CAAACCACAAACCCC

MA0002.2_RUNX1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAAGCACACWAA
AAACCACAGAN-

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAAGCACACWAA
NAAACCACAG---

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AAAGCACACWAA
AAACCACAGC--

MA0160.1_NR4A2/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AAAGCACACWAA
-AAGGTCAC---

MA0483.1_Gfi1b/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAAGCACACWAA
AAATCACAGCA-

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAAGCACACWAA
CAAAGGTCAG---

MA0038.1_Gfi1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAAGCACACWAA
CAAATCACTG---