Information for motif22


Reverse Opposite:

p-value:1e-18
log p-value:-4.210e+01
Information Content per bp:1.735
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif9.37%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif1.42%
Average Position of motif in Targets99.8 +/- 64.4bp
Average Position of motif in Background64.9 +/- 66.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTYTTATAGAAA-
CATTGTTATGCAAAT

PB0080.1_Tbp_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTYTTATAGAAA--
TCTTTATATATAAATA

MA0108.2_TBP/Jaspar

Match Rank:3
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------TTYTTATAGAAA
NNNNNNCTTTTATAN---

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TTYTTATAGAAA-
CTTTGTTATGCAAAT

POL012.1_TATA-Box/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------TTYTTATAGAAA
NNNNNNCTTTTATAN---

PB0116.1_Elf3_2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TTYTTATAGAAA
GNATTTTTTTTTTGANC

PB0187.1_Tcf7_2/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTYTTATAGAAA---
CCGTATTATAAACAA

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTYTTATAGAAA---
CTACCAATAAAATTCT

MA0052.2_MEF2A/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTYTTATAGAAA
NNGCTATTTTTAGCN-

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TTYTTATAGAAA--
TACTGGAAAAAAAA