Information for motif40


Reverse Opposite:

p-value:1e-6
log p-value:-1.464e+01
Information Content per bp:1.567
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif6.83%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif1.34%
Average Position of motif in Targets131.1 +/- 56.9bp
Average Position of motif in Background93.7 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:RTACAGTCTGTA---
GVACAGNMTGTYCTB

MA0007.2_AR/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:RTACAGTCTGTA---
GNACANNNTGTTCTT

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-RTACAGTCTGTA---
AGNACAGNCTGTTCTN

GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--RTACAGTCTGTA-
VAGRACAKWCTGTYC

MA0113.2_NR3C1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-RTACAGTCTGTA--
AGNACATTNTGTTCT

GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-RTACAGTCTGTA---
AGNACANNNTGTNCTN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.66
Offset:3
Orientation:forward strand
Alignment:RTACAGTCTGTA
---TWGTCTGV-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:forward strand
Alignment:RTACAGTCTGTA
---CTGTCTGG-

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RTACAGTCTGTA
-VBSYGTCTGG-

POL002.1_INR/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:RTACAGTCTGTA
---NNNANTGA-