Information for motif38


Reverse Opposite:

p-value:1e-11
log p-value:-2.705e+01
Information Content per bp:1.854
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif7.41%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets105.2 +/- 57.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCTAATAG-
-CTAATKGV

PB0135.1_Hoxa3_2/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCTAATAG-----
CCTTAATNGNTTTT

MA0132.1_Pdx1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTAATAG
-CTAATT-

PB0155.1_Osr2_2/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCTAATAG----
ACTTGCTACCTACACC

PB0154.1_Osr1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCTAATAG----
ACATGCTACCTAATAC

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCTAATAG--
GTTAATGGCC

MA0125.1_Nobox/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCTAATAG--
--TAATTGGT

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCTAATAG
GKTAATGR

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCTAATAG
NGCTN----

PH0107.1_Msx2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCTAATAG------
ANCGCTAATTGGTCTNN