Information for motif29


Reverse Opposite:

p-value:1e-12
log p-value:-2.795e+01
Information Content per bp:1.643
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif20.39%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif3.48%
Average Position of motif in Targets114.3 +/- 55.3bp
Average Position of motif in Background121.7 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0033.1_FOXL1/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:ATWTATHTTTAA
---TATGTNTA-

MA0153.1_HNF1B/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:ATWTATHTTTAA-
-TTAATATTTAAC

MA0031.1_FOXD1/Jaspar

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:ATWTATHTTTAA
----ATGTTTAC

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ATWTATHTTTAA--
-TTAATGTTTAACC

MF0005.1_Forkhead_class/Jaspar

Match Rank:5
Score:0.65
Offset:5
Orientation:forward strand
Alignment:ATWTATHTTTAA--
-----TGTTTATTT

PB0016.1_Foxj1_1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATWTATHTTTAA---
NNNNTTTGTTTACNNT

PB0080.1_Tbp_1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ATWTATHTTTAA---
NANTTATATATAANGN

MA0497.1_MEF2C/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ATWTATHTTTAA---
TTCTATTTTTAGNNN

MA0052.2_MEF2A/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ATWTATHTTTAA--
NNGCTATTTTTAGCN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATWTATHTTTAA-
-KCTATTTTTRGH