Information for motif20


Reverse Opposite:

p-value:1e-16
log p-value:-3.779e+01
Information Content per bp:1.838
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif6.37%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets85.9 +/- 58.8bp
Average Position of motif in Background166.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0058.2_MAX/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:CCATGTGTTT
CCATGTGCTT

MA0147.2_Myc/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCATGTGTTT
CCATGTGCTT

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CCATGTGTTT
RCCATMTGTT-

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CCATGTGTTT
GCCATCTGTT-

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CCATGTGTTT
CGACCATCTGTT-

Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCATGTGTTT-
ACCACGTGGTNN

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCATGTGTTT
KCCACGTGAC-

MA0514.1_Sox3/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCATGTGTTT-
-CCTTTGTTTT

MA0059.1_MYC::MAX/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCATGTGTTT
ACCACGTGCTC

MA0481.1_FOXP1/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCATGTGTTT-------
--CTTTGTTTACTTTTN