Information for motif4


Reverse Opposite:

p-value:1e-19
log p-value:-4.510e+01
Information Content per bp:1.606
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif1.30%
Average Position of motif in Targets76.6 +/- 49.9bp
Average Position of motif in Background112.1 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0109.1_Bbx_2/Jaspar

Match Rank:1
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----STKAACMT----
TGATTGTTAACAGTTGG

MA0031.1_FOXD1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:STKAACMT
GTAAACAT

PB0081.1_Tcf1_1/Jaspar

Match Rank:3
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------STKAACMT---
NNNTTAGTTAACTNANN

PH0167.1_Tcf1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----STKAACMT----
CCTTAGTTAACTAAAAT

PB0018.1_Foxk1_1/Jaspar

Match Rank:5
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------STKAACMT---
NNNTTTGTTTACATTTN

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------STKAACMT---
NNGTATGTGCACATNNN

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-STKAACMT-
TGTTTACTTT

PH0168.1_Hnf1b/Jaspar

Match Rank:8
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------STKAACMT--
ANNNCTAGTTAACNGNN

PH0085.1_Irx4/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--STKAACMT-------
NNTTTTACATGTANNNT

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-STKAACMT-
TGTTTACTTT