Information for motif12


Reverse Opposite:

p-value:1e-21
log p-value:-4.855e+01
Information Content per bp:1.635
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif6.95%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets90.1 +/- 54.4bp
Average Position of motif in Background163.3 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GTGCTCACCAGG---
---CACAGCAGGGGG

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GTGCTCACCAGG---
GAGCACAGCAGGACA

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GTGCTCACCAGG---
CCACACAGCAGGAGA

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTGCTCACCAGG---
CCACACAGCAGGAGA

MA0103.2_ZEB1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTGCTCACCAGG
--CCTCACCTG-

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GTGCTCACCAGG
CGAACAGTGCTCACTAT-

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GTGCTCACCAGG-
---NNCACCTGNN

MA0154.2_EBF1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GTGCTCACCAGG--
---GTCCCCAGGGA

MA0139.1_CTCF/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTGCTCACCAGG--------
-TGGCCACCAGGGGGCGCTA

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GTGCTCACCAGG
CAGATGTGCACATACGT