Information for motif2


Reverse Opposite:

p-value:1e-29
log p-value:-6.738e+01
Information Content per bp:1.774
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif8.76%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets98.8 +/- 57.2bp
Average Position of motif in Background22.5 +/- 10.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGATGTG
GCAGTGATTT-

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CAGAGATGTG-
CAAATCCAGACATCACA

MA0483.1_Gfi1b/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGATGTG
TGCTGTGATTT-

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGATGTG
CCAGACRSVB-

MA0038.1_Gfi1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAGAGATGTG
CNGTGATTTN

PB0126.1_Gata5_2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CAGAGATGTG---
GACAGAGATATCAGTGT

MA0035.3_Gata1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAGAGATGTG--
-ANAGATAAGAA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGATGTG
CCAGACAG---

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CAGAGATGTG
ATGCCAGACN----

MA0482.1_Gata4/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CAGAGATGTG-
NNGAGATAAGA