Information for motif27


Reverse Opposite:

p-value:1e-15
log p-value:-3.540e+01
Information Content per bp:1.795
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif11.48%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif2.25%
Average Position of motif in Targets106.1 +/- 63.2bp
Average Position of motif in Background68.5 +/- 38.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CSTTTTTT------
TTTTTTTTCNNGTN

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CSTTTTTT------
NNNNTTTTTTTTTNAAC

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CSTTTTTT-----
TNNTCCTTTGTTCTNNT

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CSTTTTTT-----
NNNTCCTTTGTTCTNNN

PB0116.1_Elf3_2/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CSTTTTTT------
GNATTTTTTTTTTGANC

MA0514.1_Sox3/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CSTTTTTT--
CCTTTGTTTT

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CSTTTTTT----
--TTTTATTRGN

PB0148.1_Mtf1_2/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CSTTTTTT-------
-NNTTTTTCTTATNT

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CSTTTTTT---
-NTTTTATGAC

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CSTTTTTT
CCWTTGTY