Information for motif30


Reverse Opposite:

p-value:1e-14
log p-value:-3.372e+01
Information Content per bp:1.765
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif6.95%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets96.1 +/- 54.8bp
Average Position of motif in Background98.3 +/- 57.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----ATCCAGTG-----
NANTTTCAAGTGGTTAN

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----ATCCAGTG-----
NNNANTGCAGTGCNNTT

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATCCAGTG-----
AANTTCAAGTGGCTTN

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATCCAGTG-----
AATTTCAAGTGGCTTN

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATCCAGTG--
GKVTCADRTTWC

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ATCCAGTG--
CTYRAGTGSY

PH0114.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ATCCAGTG-----
AAATTCAAGTGGNTTN

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ATCCAGTG
ACATCCTGNT

MA0122.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ATCCAGTG--
-TTAAGTGGA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATCCAGTG---
-TTGAGTGSTT