Information for motif33


Reverse Opposite:

p-value:1e-13
log p-value:-3.138e+01
Information Content per bp:1.682
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif5.14%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets92.9 +/- 56.2bp
Average Position of motif in Background99.0 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0075.1_Prrx2/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GTCDAATT
---TAATT

MA0132.1_Pdx1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GTCDAATT
--CTAATT

PH0021.1_Dlx2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTCDAATT-------
GGAATAATTACCTCAG

MA0125.1_Nobox/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GTCDAATT---
---TAATTGGT

PH0107.1_Msx2/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GTCDAATT------
GAAGACCAATTAGCGCT

PH0033.1_Gbx1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTCDAATT-------
TNCACTAATTAGTNNNN

PH0022.1_Dlx3/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GTCDAATT------
TCGCGATAATTACCGAC

PH0089.1_Isx/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTCDAATT------
ACNNCTAATTAGNNNN

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTCDAATT-
-NCTAATTA

PH0131.1_Pax4/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTCDAATT-------
TGAACTAATTAGCCCAC