Information for motif39


Reverse Opposite:

p-value:1e-10
log p-value:-2.484e+01
Information Content per bp:1.605
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif5.74%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets77.4 +/- 54.7bp
Average Position of motif in Background162.4 +/- 10.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGGTGGTGTTGT---
NNNTGTTGTTGTTNG

PB0120.1_Foxj1_2/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGGTGGTGTTGT-----
--GTNTTGTTGTGANNT

MA0133.1_BRCA1/Jaspar

Match Rank:3
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:AGGTGGTGTTGT
-----GTGTTGN

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----AGGTGGTGTTGT-
NNANTGGTGGTCTTNNN

PB0117.1_Eomes_2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGGTGGTGTTGT
GCGGAGGTGTCGCCTC

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGGTGGTGTTGT
NNCAGGTGNN-----

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGGTGGTGTTGT---
AGATGCTRCTRCCHT

PB0123.1_Foxl1_2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGGTGGTGTTGT-----
-NNTTTTGTTTTGATNT

MA0073.1_RREB1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGGTGGTGTTGT----
NGGGGGGGGGTGGTTTGGGG

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGGTGGTGTTGT
NNHTGTGGTTWN--