Information for motif40


Reverse Opposite:

p-value:1e-10
log p-value:-2.484e+01
Information Content per bp:1.739
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif5.74%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.96%
Average Position of motif in Targets95.7 +/- 54.9bp
Average Position of motif in Background105.8 +/- 39.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0037.2_GATA3/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGTAGAGAATAA
---AGATAAGA-

MA0078.1_Sox17/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGTAGAGAATAA-
----GACAATGNN

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGTAGAGAATAA
---AGATAASR-

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGTAGAGAATAA---
-NTTNAGAACAATTA

MA0035.3_Gata1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGTAGAGAATAA
-ANAGATAAGAA

PB0015.1_Foxa2_1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGTAGAGAATAA-
AAAAAGTAAACAAAGAC

MA0036.2_GATA2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGTAGAGAATAA---
-NCAGATAAGAANNN

PB0021.1_Gata3_1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGTAGAGAATAA------
TTTTTAGAGATAAGAAATAAAG

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGTAGAGAATAA
AATGGAAAAT--

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGTAGAGAATAA---
CTCACACAATGGCGC