Information for motif42


Reverse Opposite:

p-value:1e-10
log p-value:-2.349e+01
Information Content per bp:1.667
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif8.46%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif2.05%
Average Position of motif in Targets83.5 +/- 48.8bp
Average Position of motif in Background131.8 +/- 46.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0483.1_Gfi1b/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CAAGCTCAGC-
AAATCACAGCA

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CAAGCTCAGC
AAATCACTGC

MA0141.2_Esrrb/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CAAGCTCAGC
AGCTCAAGGTCA--

MA0592.1_ESRRA/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAAGCTCAGC
CCAAGGTCACA

MA0505.1_Nr5a2/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CAAGCTCAGC
AAGTTCAAGGTCAGC

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAAGCTCAGC
TCAAGGTCAN-

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAAGCTCAGC
BTCAAGGTCA--

MA0164.1_Nr2e3/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAAGCTCAGC
CAAGCTT---

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAAGCTCAGC
CAAAGGTCAG-

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAAGCTCAGC---
TATTCAAGGTCATGCGA