Information for motif6


Reverse Opposite:

p-value:1e-23
log p-value:-5.466e+01
Information Content per bp:1.725
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif7.55%
Number of Background Sequences with motif0.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets114.6 +/- 49.8bp
Average Position of motif in Background111.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----KTGCTATGTG-
NCCGTTGCTANGNGN

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----KTGCTATGTG-
NNCGTTGCTATGGNN

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.65
Offset:-8
Orientation:reverse strand
Alignment:--------KTGCTATGTG-----
NTNNNNNGTTGCTANGGNNCANA

MA0442.1_SOX10/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:KTGCTATGTG
---CTTTGT-

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----KTGCTATGTG-
TNTCCTGCTGTGNNG

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---KTGCTATGTG
CTGTTGCTAGGS-

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-KTGCTATGTG-----
ANTCCTTTGTCTNNNN

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-KTGCTATGTG-----
NNNNTTGTGTGCTTNN

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----KTGCTATGTG---
NNNANTGCAGTGCNNTT

PH0134.1_Pbx1/Jaspar

Match Rank:10
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------KTGCTATGTG-
NNNNNATTGATGNGTGN