Information for motif9


Reverse Opposite:

p-value:1e-23
log p-value:-5.466e+01
Information Content per bp:1.642
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif7.55%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets92.7 +/- 53.7bp
Average Position of motif in Background59.9 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0029.1_Mecom/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TRTCGTGT---
TNTTATCTTATCTT

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TRTCGTGT----
NNCTTTGTTTTGNTNNN

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TRTCGTGT---
NNNCCATTGTGTNAN

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TRTCGTGT------
NNNNTTGTGTGCTTNN

PB0032.1_IRC900814_1/Jaspar

Match Rank:5
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------TRTCGTGT--
GNNATTTGTCGTAANN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TRTCGTGT-
NNHTGTGGTTWN

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TRTCGTGT-
ATTTCCTGTN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TRTCGTGT
GCTGTGGTTT

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TRTCGTGT-
ATTTCCTGTN

MA0511.1_RUNX2/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------TRTCGTGT-
GGGGTTTGTGGTTTG