Information for motif11


Reverse Opposite:

p-value:1e-20
log p-value:-4.736e+01
Information Content per bp:1.386
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif7.49%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets90.0 +/- 53.2bp
Average Position of motif in Background169.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:TTGGTGCCACAG
----TGCCAA--

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TTGGTGCCACAG
---TTGCCAAG-

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TTGGTGCCACAG
-AGGTGTCA---

PH0164.1_Six4/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTGGTGCCACAG--
TNNNNGGTGTCATNTNT

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TTGGTGCCACAG----
ACTATGCCAACCTACC

PB0113.1_E2F3_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TTGGTGCCACAG--
AGCTCGGCGCCAAAAGC

PB0112.1_E2F2_2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTGGTGCCACAG--
CCTTCGGCGCCAAAAGG

MA0119.1_TLX1::NFIC/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TTGGTGCCACAG
TTGGCATGGTGCCA---

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TTGGTGCCACAG-
-AGGTGHCAGACA

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTGGTGCCACAG---
GGGTGTGCCCAAAAGG