Information for motif35


Reverse Opposite:

p-value:1e-10
log p-value:-2.311e+01
Information Content per bp:1.771
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif4.49%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets127.7 +/- 55.2bp
Average Position of motif in Background93.3 +/- 58.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0465.1_CDX2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AAGTCATAAAGC
AAGCCATAAAA-

PH0047.1_Hoxa11/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AAGTCATAAAGC--
TAAAGTCGTAAAACAT

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAGTCATAAAGC--
TAAAGTCGTAAAACGT

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AAGTCATAAAGC
--GTCATAAAAN

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAGTCATAAAGC--
TAAAGTCGTAAAATAG

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AAGTCATAAAGC-
-GGCCATAAATCA

PH0073.1_Hoxc9/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAGTCATAAAGC--
GGAGGTCATTAATTAT

MA0594.1_Hoxa9/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAGTCATAAAGC-
--GCCATAAATCA

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAGTCATAAAGC---
AGAGCCATAAAATTCG

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AAGTCATAAAGC
--GTCATN----