Information for motif40


Reverse Opposite:

p-value:1e-5
log p-value:-1.313e+01
Information Content per bp:1.617
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif5.62%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets86.0 +/- 46.9bp
Average Position of motif in Background73.8 +/- 3.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------TACTAGTA-
GATAACATCCTAGTAG

PB0195.1_Zbtb3_2/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TACTAGTA----
NNNNTGCCAGTGATTG

MA0032.1_FOXC1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TACTAGTA
GGTAAGTA

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TACTAGTA------
GAAAACTAGTTAACATC

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TACTAGTA--------
TTCNAAGTACTTNNNNN

PB0096.1_Zfp187_1/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TACTAGTA-
TTATGTACTAATAA

PH0083.1_Irx3_1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TACTAGTA----
ANTATTACATGTANNNN

PB0129.1_Glis2_2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TACTAGTA--
TCTTTANTAATANN

PH0084.1_Irx3_2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TACTAGTA-----
AATATACATGTAATATA

PH0082.1_Irx2/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TACTAGTA----
ANTNTTACATGTATNTA