Information for motif41


Reverse Opposite:

p-value:1e-5
log p-value:-1.309e+01
Information Content per bp:1.625
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif4.87%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif1.18%
Average Position of motif in Targets102.9 +/- 49.0bp
Average Position of motif in Background91.8 +/- 53.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0064.1_Sox14_1/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---AATTAAAATTTC-
GCTAATTATAATTATC

PB0079.1_Sry_1/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AATTAAAATTTC-
TATAATTATAATATTC

PB0069.1_Sox21_1/Jaspar

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---AATTAAAATTTC-
TTTAATTATAATTAAG

PB0001.1_Arid3a_1/Jaspar

Match Rank:4
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------AATTAAAATTTC
GGGTTTAATTAAAATTC-

PH0101.1_Lmx1b/Jaspar

Match Rank:5
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------AATTAAAATTTC
NNAATTAATTAAAAANN-

PH0075.1_Hoxd10/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AATTAAAATTTC-
AATGCAATAAAATTTAT

PH0100.1_Lmx1a/Jaspar

Match Rank:7
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------AATTAAAATTTC
CGAATTAATTAAAAACC-

MA0151.1_ARID3A/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AATTAAAATTTC
-ATTAAA-----

PB0174.1_Sox30_2/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AATTAAAATTTC-
NCGTATTATAATCNTA

MA0075.1_Prrx2/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AATTAAAATTTC
AATTA-------