Information for motif42


Reverse Opposite:

p-value:1e-5
log p-value:-1.158e+01
Information Content per bp:1.530
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif3.75%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets104.8 +/- 57.6bp
Average Position of motif in Background162.6 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CGTCGCTT-----
TCCGTCGCTTAAAAG

PB0131.1_Gmeb1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------CGTCGCTT-
TGGGCGACGTCGTTAA

PB0147.1_Max_2/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CGTCGCTT-----
NNGTCGCGTGNCAC

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CGTCGCTT-----
NCCGTTGCTANGNGN

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CGTCGCTT
---NGCTN

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGTCGCTT
TGTCGGTT

PH0044.1_Homez/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CGTCGCTT-----
AAAACATCGTTTTTAAG

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGTCGCTT--
----GCTTCC

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CGTCGCTT-----
NNCGTTGCTATGGNN

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CGTCGCTT
ACGTCA---