Information for motif11


Reverse Opposite:

p-value:1e-25
log p-value:-5.764e+01
Information Content per bp:1.748
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif18.06%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif1.96%
Average Position of motif in Targets99.6 +/- 53.2bp
Average Position of motif in Background95.6 +/- 48.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTAGAGTA--
CTYRAGTGSY

MA0032.1_FOXC1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTAGAGTA
GGTAAGTA

PB0051.1_Osr2_1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTAGAGTA------
ATGTACAGTAGCAAAG

PB0050.1_Osr1_1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTAGAGTA------
ATTTACAGTAGCAAAA

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTAGAGTA--
-TTAAGTGGA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTAGAGTA---
-TTGAGTGSTT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTAGAGTA---
CTTGAGTGGCT

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTAGAGTA---
-TTAAGTGCTT

PH0116.1_Nkx2-9/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTAGAGTA-------
NATTTAAGTACTTNAAA

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTAGAGTA-----
NNNANTGCAGTGCNNTT