Information for motif13


Reverse Opposite:

p-value:1e-24
log p-value:-5.591e+01
Information Content per bp:1.735
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif15.28%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif1.54%
Average Position of motif in Targets99.7 +/- 53.4bp
Average Position of motif in Background48.8 +/- 39.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GWATGTKTKATG-
---TGATTGATGA

MA0594.1_Hoxa9/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GWATGTKTKATG--
---TGATTTATGGC

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GWATGTKTKATG--
--ATGATKGATGRC

MA0070.1_PBX1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GWATGTKTKATG-
-TTTGATTGATGN

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GWATGTKTKATG---
---TGATTRATGGCY

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GWATGTKTKATG
--AGGTGTGAAM

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GWATGTKTKATG---
---TGATTTATGGCC

MA0041.1_Foxd3/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GWATGTKTKATG
GAATGTTTGTTT

MA0084.1_SRY/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GWATGTKTKATG
-ATTGTTTAN--

MA0151.1_ARID3A/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GWATGTKTKATG
-----TTTAAT-