Information for motif19


Reverse Opposite:

p-value:1e-21
log p-value:-4.919e+01
Information Content per bp:1.524
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif1.22%
Average Position of motif in Targets99.9 +/- 56.8bp
Average Position of motif in Background86.8 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCTTTTGDCAKK
GGTGYTGACAGS

MA0161.1_NFIC/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GCTTTTGDCAKK
----TTGGCA--

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCTTTTGDCAKK
-CCTTTGTTTT-

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCTTTTGDCAKK
---CTTGGCAA-

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCTTTTGDCAKK
-CCWTTGTY---

MA0100.2_Myb/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GCTTTTGDCAKK---
-----TGGCAGTTGN

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCTTTTGDCAKK---
NCNTTTGTTATTTNN

MA0133.1_BRCA1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCTTTTGDCAKK
-GTGTTGN----

MA0498.1_Meis1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GCTTTTGDCAKK-----
--AGCTGTCACTCACCT

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCTTTTGDCAKK-----
-GTATTGACAGGTNNTT