Information for motif2


Reverse Opposite:

p-value:1e-33
log p-value:-7.762e+01
Information Content per bp:1.436
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif15.28%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets105.4 +/- 57.0bp
Average Position of motif in Background161.9 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0522.1_Tcf3/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-DGCAGKTGTG
NTGCAGCTGTG

MA0103.2_ZEB1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:DGCAGKTGTG-
--CAGGTGAGG

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-DGCAGKTGTG----
GTNTTGTTGTGANNT

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:DGCAGKTGTG
NNCAGGTGNN

PB0047.1_Myf6_1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----DGCAGKTGTG--
GAAGAACAGGTGTCCG

E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:DGCAGKTGTG-
-GCAGCTGTNN

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:DGCAGKTGTG---
---AGGTGTGAAM

PB0150.1_Mybl1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---DGCAGKTGTG--
CACGGCAGTTGGTNN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:DGCAGKTGTG--
--CCATTGTTNY

PB0122.1_Foxk1_2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:DGCAGKTGTG-----
NNNTGTTGTTGTTNG