Information for motif22


Reverse Opposite:

p-value:1e-20
log p-value:-4.756e+01
Information Content per bp:1.637
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif18.06%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif2.94%
Average Position of motif in Targets105.8 +/- 56.5bp
Average Position of motif in Background83.4 +/- 53.6bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0151.1_ARID3A/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GCTTRATT
-TTTAAT-

PB0001.1_Arid3a_1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCTTRATT-------
GGGTTTAATTAAAATTC

MA0075.1_Prrx2/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GCTTRATT
---TAATT

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GCTTRATT-----
NNANTTTTATTGGNNN

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GCTTRATT-----
NTNAATTTTATTGNATT

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCTTRATT---
-TTTTATTRGN

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GCTTRATT-----
NNAATTTTATTGGNTN

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GCTTRATT-----
TNNTCCTTTGTTCTNNT

PB0176.1_Sox5_2/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCTTRATT-----
TATCATAATTAAGGA

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCTTRATT--
NTTTTATGAC