Information for motif23


Reverse Opposite:

p-value:1e-20
log p-value:-4.624e+01
Information Content per bp:1.751
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif10.65%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets88.6 +/- 52.5bp
Average Position of motif in Background158.2 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:HCCAGCAGGT--
CACAGCAGGGGG

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---HCCAGCAGGT--
CCACACAGCAGGAGA

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---HCCAGCAGGT--
CCACACAGCAGGAGA

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:HCCAGCAGGT---
---NNCAGGTGNN

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---HCCAGCAGGT--
GAGCACAGCAGGACA

MA0103.2_ZEB1/Jaspar

Match Rank:6
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:HCCAGCAGGT----
-----CAGGTGAGG

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:HCCAGCAGGT-------
ATCCACAGGTGCGAAAA

MA0461.1_Atoh1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:HCCAGCAGGT
--CAGATGGC

MA0139.1_CTCF/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--HCCAGCAGGT-------
TGGCCACCAGGGGGCGCTA

MA0522.1_Tcf3/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:HCCAGCAGGT---
--NTGCAGCTGTG