Information for motif29


Reverse Opposite:

p-value:1e-17
log p-value:-4.049e+01
Information Content per bp:1.690
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif9.72%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets102.4 +/- 50.5bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AATTTTAAAGTT
CGGTTTCAAA---

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AATTTTAAAGTT
-ACATCAAAGG-

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AATTTTAAAGTT-----
NANTTTCAAGTGGTTAN

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AATTTTAAAGTT
-ACWTCAAAGG-

Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AATTTTAAAGTT------
NTAATTDGCYAATTANNWWD

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AATTTTAAAGTT--
NNANTTTTATTGGNNN

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----AATTTTAAAGTT
NNNNNNCTTTTATAN--

MA0108.2_TBP/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----AATTTTAAAGTT
NNNNNNCTTTTATAN--

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AATTTTAAAGTT
CCTTTTATAGNC

MA0523.1_TCF7L2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AATTTTAAAGTT-
AAAGATCAAAGGAA