Information for motif39


Reverse Opposite:

p-value:1e-10
log p-value:-2.524e+01
Information Content per bp:1.670
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif2.35%
Average Position of motif in Targets110.6 +/- 51.9bp
Average Position of motif in Background17.6 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CACTAGGW-------
CTACTAGGATGTNNTN

MA0122.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CACTAGGW
NCCACTTAN-

PB0195.1_Zbtb3_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CACTAGGW----
CAATCACTGGCAGAAT

MA0009.1_T/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CACTAGGW-----
--CTAGGTGTGAA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CACTAGGW
AASCACTCAA-

PB0200.1_Zfp187_2/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CACTAGGW---
NNAGGGACAAGGGCNC

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CACTAGGW--------
TGGCCACCAGGTGGCACTNT

MA0139.1_CTCF/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CACTAGGW-------
TGGCCACCAGGGGGCGCTA

Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CACTAGGW--
GTAGGTCACTGGGTCA

PH0040.1_Hmbox1/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CACTAGGW---
GANGTTAACTAGTTTNN