Information for motif40


Reverse Opposite:

p-value:1e-10
log p-value:-2.505e+01
Information Content per bp:1.788
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif9.26%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif1.39%
Average Position of motif in Targets115.1 +/- 57.3bp
Average Position of motif in Background162.2 +/- 1.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0058.2_MAX/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CATGTGCCAG
CCATGTGCTT-

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CATGTGCCAG-
-CTGTTCCTGG

MA0526.1_USF2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CATGTGCCAG
GTCATGTGACC-

MA0147.2_Myc/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CATGTGCCAG
CCATGTGCTT-

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CATGTGCCAG
KCCACGTGAC--

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CATGTGCCAG
CACGTGNC--

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CATGTGCCAG
ACCACGTGAC--

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CATGTGCCAG
KCACGTGMCN-

MA0161.1_NFIC/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CATGTGCCAG
----TGCCAA

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CATGTGCCAG---
---ATGCCAGACN