Information for motif42


Reverse Opposite:

p-value:1e-7
log p-value:-1.651e+01
Information Content per bp:1.543
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif8.80%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif2.20%
Average Position of motif in Targets110.7 +/- 48.6bp
Average Position of motif in Background172.4 +/- 7.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0497.1_MEF2C/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTCTATTCTA-----
TTCTATTTTTAGNNN

PB0033.1_Irf3_1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTCTATTCTA
CAGTTTCGNTTCTN

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTCTATTCTA
GTTTCACTTCCG

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTCTATTCTA--
--CTATTTTTGG

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TTCTATTCTA
ACTTTCGTTTCT-

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TTCTATTCTA--
CCATTGTATGCAAAT

PB0021.1_Gata3_1/Jaspar

Match Rank:7
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------TTCTATTCTA------
NNTNANTTCTTATCTCTANANN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTCTATTCTA---
-KCTATTTTTRGH

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TTCTATTCTA--
NTNAATTTTATTGNATT

MA0052.2_MEF2A/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTCTATTCTA----
NNGCTATTTTTAGCN