Information for motif6


Reverse Opposite:

p-value:1e-27
log p-value:-6.396e+01
Information Content per bp:1.708
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif1.44%
Average Position of motif in Targets114.5 +/- 56.1bp
Average Position of motif in Background161.7 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0594.1_Hoxa9/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GATTCRTG--
TGATTTATGGC

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GATTCRTG-
TGATTGATGA

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GATTCRTG-----
ACATTCATGACACG

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GATTCRTG---
TGATTTATGGCC

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GATTCRTG---
TGATTTATGGCC

MA0038.1_Gfi1/Jaspar

Match Rank:6
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----GATTCRTG
CNGTGATTTN--

MA0485.1_Hoxc9/Jaspar

Match Rank:7
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GATTCRTG---
NTGATTTATGGCC

MA0070.1_PBX1/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GATTCRTG-
TTTGATTGATGN

MA0158.1_HOXA5/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GATTCRTG
AATTAGTG

PB0144.1_Lef1_2/Jaspar

Match Rank:10
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GATTCRTG---
NNANTGATTGATNTTN